Home Pairwise comparison One-2-All search TOPOFIT-database Interface Software (Friend) Contact Us TOPOFIT-DB, a comprehensive database of accurate protein structure alignments by TOPOFIT

Navigation Menu Topofit Home T-Pair Pairwise Comparison One-2-All Search TOPOFIT-database T-DB with SCOP IDs T-DB with CATH IDs Interface Software Statistics Examples Help Contact Us T-Pair TOPOFIT email/web server: This utility allows for the comparison between two user given pdb codes or uploaded PDB files and aligns them using TOPOFIT, all results can be seen on the web or optionally emailed (example output). To compare structures from the PDB you just need to enter two PDB-codes and chains to compare. To compare structures not from PDB, please enter structure's names, chains and files to upload the structures.   PDB code    chain  *OR upload file1  ALIGN TO    PDB code    chain  *OR upload file2  (*optional*) email (*optional*) confirm email     Comments to be inserted in the email (*optional*)

TOPOFIT-DB web link: topofit.ilyinlab.org TOPOFIT-DB Reference: Chesley M.Leslin, Alexej Abyzov, and Valentin A. Ilyin, TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method. Nucleic Acids Research 2007 35(Database issue):D317-D321 TOPOFIT Reference: Valentin A. Ilyin, Alexej Abyzov, and Chesley M.Leslin, Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. Protein Science (2004), 13:1865-1874.         Friday 30th 2010f July 2010 11:40:08 AM